Lexicographer review — Page 28 of 37 S4

first Adjective

Instance: senseval2.d001.s049.t012 Dataset: Senseval-2

Under a microscope he could actually see that a bit of chromosome 13 was missing .

He assumed the missing piece contained a gene or genes whose loss had a critical role in setting off the cancer .

But he did not know which gene or genes had disappeared .

Then , a scientific team led by molecular geneticist Webster Cavenee , then at the University of Utah , found the answer .

The team used a battery of the newly developed “ gene probes , “ snippets of genetic material that can track a gene 's presence in a cell .

By analyzing cells extracted from eye tumors , they found defects in the second copy of chromosome 13 in the exact area as in the first copy of the chromosome .

The finding riveted medicine .

It was the first time anyone had showed that the loss of both copies of the same gene could lead to the eruption of a cancer .

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loss Noun

Instance: senseval2.d001.s056.t005 Dataset: Senseval-2

It was the first time anyone had showed that the loss of both copies of the same gene could lead to the eruption of a cancer .

“ It was extraordinarily satisfying , “ says Dr. Knudson , now at Fox Chase Cancer Research Center in Philadelphia .

“ I was convinced that what was true of retinoblastoma would be true for all cancers . “

It was an audacious claim .

But in Baltimore , Dr. Vogelstein , a young molecular biologist at Johns Hopkins Medical School , believed Dr. Knudson was right , and set out to repeat the Cavenee experiment in cells from other cancers .

His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm 's tumor .

Dr. Vogelstein next turned his attention colon cancer , the second biggest cancer killer in the U.S. after lung cancer .

He believed colon cancer might also arise from multiple “ hits “ on cancer suppressor genes , because it often seems to develop in stages .

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begin Verb

Instance: senseval2.d001.s060.t002 Dataset: Senseval-2

But in Baltimore , Dr. Vogelstein , a young molecular biologist at Johns Hopkins Medical School , believed Dr. Knudson was right , and set out to repeat the Cavenee experiment in cells from other cancers .

His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm 's tumor .

Dr. Vogelstein next turned his attention colon cancer , the second biggest cancer killer in the U.S. after lung cancer .

He believed colon cancer might also arise from multiple “ hits “ on cancer suppressor genes , because it often seems to develop in stages .

It often is preceded by the development of polyps in the bowel , which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring .

Dr. Vogelstein and a doctoral student , Eric Fearon , began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage .

They began uncovering a confusing variety of genetic deletions , some existing only in benign polyps , others in malignant cells and many in both polyps and malignant cells .

Gradually , a coherent picture of cancer development emerged .

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sign Noun

Instance: senseval2.d001.s060.t010 Dataset: Senseval-2

But in Baltimore , Dr. Vogelstein , a young molecular biologist at Johns Hopkins Medical School , believed Dr. Knudson was right , and set out to repeat the Cavenee experiment in cells from other cancers .

His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm 's tumor .

Dr. Vogelstein next turned his attention colon cancer , the second biggest cancer killer in the U.S. after lung cancer .

He believed colon cancer might also arise from multiple “ hits “ on cancer suppressor genes , because it often seems to develop in stages .

It often is preceded by the development of polyps in the bowel , which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring .

Dr. Vogelstein and a doctoral student , Eric Fearon , began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage .

They began uncovering a confusing variety of genetic deletions , some existing only in benign polyps , others in malignant cells and many in both polyps and malignant cells .

Gradually , a coherent picture of cancer development emerged .

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development Noun

Instance: senseval2.d001.s067.t006 Dataset: Senseval-2

Gradually , a coherent picture of cancer development emerged .

If both copies of a certain gene were knocked out , benign polyps would develop .

If both copies of a second gene were then deleted , the polyps would progress to malignancy .

It was clear that more than one gene had to be damaged for colon cancer to develop .

Their report galvanized other molecular biologists .

“ It was the confirming evidence we all needed that gene losses were critical to the development of a common tumor , “ says Ray White at Howard Hughes Medical Institute in Salt Lake City .

But Dr. Vogelstein had yet to nail the identity of the gene that , if damaged , flipped a colon cell into full-blown malignancy .

They focused on chromosome 17 .

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find Verb

Instance: senseval2.d001.s072.t000 Dataset: Senseval-2

“ It was the confirming evidence we all needed that gene losses were critical to the development of a common tumor , “ says Ray White at Howard Hughes Medical Institute in Salt Lake City .

But Dr. Vogelstein had yet to nail the identity of the gene that , if damaged , flipped a colon cell into full-blown malignancy .

They focused on chromosome 17 .

For months the Johns Hopkins researchers , using gene probes , experimentally crawled down the length of chromosome 17 , looking for the smallest common bit of genetic material lost in all tumor cells .

Such a piece of DNA would probably constitute a gene .

When they found it last winter , Dr. Vogelstein was dubious that the search was over .

His doubts stemmed from the fact that several years earlier a Princeton University researcher , Arnold Levine , had found in experiments with mice that a gene called p53 could transform normal cells into cancerous ones .

The deletion Dr. Vogelstein found was in exactly the same spot as p53 .

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doubt Noun

Instance: senseval2.d001.s073.t000 Dataset: Senseval-2

But Dr. Vogelstein had yet to nail the identity of the gene that , if damaged , flipped a colon cell into full-blown malignancy .

They focused on chromosome 17 .

For months the Johns Hopkins researchers , using gene probes , experimentally crawled down the length of chromosome 17 , looking for the smallest common bit of genetic material lost in all tumor cells .

Such a piece of DNA would probably constitute a gene .

When they found it last winter , Dr. Vogelstein was dubious that the search was over .

His doubts stemmed from the fact that several years earlier a Princeton University researcher , Arnold Levine , had found in experiments with mice that a gene called p53 could transform normal cells into cancerous ones .

The deletion Dr. Vogelstein found was in exactly the same spot as p53 .

But Mr. Levine had said the p53 gene caused cancer by promoting growth , whereas the Johns Hopkins scientists were looking for a gene that suppressed growth .

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growth Noun

Instance: senseval2.d001.s075.t010 Dataset: Senseval-2

For months the Johns Hopkins researchers , using gene probes , experimentally crawled down the length of chromosome 17 , looking for the smallest common bit of genetic material lost in all tumor cells .

Such a piece of DNA would probably constitute a gene .

When they found it last winter , Dr. Vogelstein was dubious that the search was over .

His doubts stemmed from the fact that several years earlier a Princeton University researcher , Arnold Levine , had found in experiments with mice that a gene called p53 could transform normal cells into cancerous ones .

The deletion Dr. Vogelstein found was in exactly the same spot as p53 .

But Mr. Levine had said the p53 gene caused cancer by promoting growth , whereas the Johns Hopkins scientists were looking for a gene that suppressed growth .

Despite that , when the Johns Hopkins scientists compared the gene they had found in the human cancer cells with the Mr. Levine 's p53 gene they found the two were identical ; it turned out that in Mr. Levine 's cancer studies , he had unknowingly been observing a damaged form of p53 -- a cancer-suppressing gene .

The discovery “ suddenly puts an obscure gene right in the cockpit of cancer formation , “ says Robert Weinberg , a leader in cancer-gene research at Whitehead Institute in Cambridge , Mass .

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violate Verb

Instance: senseval2.d002.s003.t016 Dataset: Senseval-2

Why ca not we teach our children to read , write and reckon ?

It 's not that we do not know how to , because we do .

It 's that we do not want to .

And the reason we do not want to is that effective education would require us to relinquish some cherished metaphysical beliefs about human nature in general and the human nature of young people in particular , well as to violate some cherished vested interests .

These beliefs so dominate our educational establishment , our media , our politicians , and even our parents that it seems almost blasphemous to challenge them .

Here is an example .

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so Adverb

Instance: senseval2.d002.s004.t001 Dataset: Senseval-2

Why ca not we teach our children to read , write and reckon ?

It 's not that we do not know how to , because we do .

It 's that we do not want to .

And the reason we do not want to is that effective education would require us to relinquish some cherished metaphysical beliefs about human nature in general and the human nature of young people in particular , well as to violate some cherished vested interests .

These beliefs so dominate our educational establishment , our media , our politicians , and even our parents that it seems almost blasphemous to challenge them .

Here is an example .

If I were to ask a sample of American parents , “ Do you wish the elementary schools to encourage creativity in your children ? “ the near-unanimous answer would be , “ Yes , of course . “

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